NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000642

Scaffold Ga0335085_10000642


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000642 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92819
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (78.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012383Metagenome281Y
F036407Metagenome / Metatranscriptome170Y
F065888Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000064218F065888GGAGMSVSSLRKLACWTMVAVVPASLWAADSSPAMLYAKGTAWINGSTVPHTSAVFPGDLVQTRSDSMASINASGSSVVVLADSLVKFEGATVGLEHGGLTVATSKGLGTQAGDIEVVPVSNGWTQFAVKRVSEDTVQVVAQKGDVKVSDGSTTSTLAQGQQMTVDNAVEKKKKKRRKGGGAIPASGGAVLDSPYVIYGGAAAAGGLLTWVLLQGDPPVSSVAP
Ga0335085_100006423F012383GGAGMPNNLRDLHLPADLCDEAERRFAARYGNLEEFLKFLLRELLRDDAVKMDEAEQRVIEERLRDLGYL
Ga0335085_1000064235F036407GGAGGMAQVIEFYIPTRFKPKVKWVPAEQRGKILVFPTDLKKSA
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