NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000100

Scaffold Ga0335085_10000100


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000100 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)278844
Total Scaffold Genes242 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)194 (80.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002916Metagenome / Metatranscriptome521Y
F012620Metagenome / Metatranscriptome279Y
F042041Metagenome / Metatranscriptome159Y
F071116Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000100124F042041GAGGMKLSHRIAVALTMALGFTPGAWAQGCVLCYTSLSNSGPGAMHAFQMAMFALLIPALLLFLGVFLLIFLRARTRPAAPATMRKRVNAVRPIPHINPAEGRA
Ga0335085_10000100159F002916GGAGGVRYLPGWTVQCINPECQARGHWLRADSAPEDHCSNCGELLHNVPPPLASRLRLRPRPLTVYRPGRAR
Ga0335085_1000010018F071116GGAMPVVFIVSREWDLRGAVRAELREAGIAAMGMETVDDMARTIAGGVAPDLVVLDGDYLHHPPTRQAVQNLASRVPVLVVDSRANPAPPLPGAELLSRPVQVKEIVARVLARLGAARS
Ga0335085_10000100184F012620GGAMKRDTIRTTVDVPAPLYRKLKEQAAAQGRSIRELILRGISNSLLESKRPRPKRVRFPLIVSRGPKVDLTNEKIYEHVEFP
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Institute for Fundamental Biomedical Research
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