NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000016

Scaffold Ga0335085_10000016


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000016 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)660605
Total Scaffold Genes555 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)373 (67.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002976Metagenome / Metatranscriptome516Y
F022233Metagenome / Metatranscriptome215Y
F062813Metagenome / Metatranscriptome130Y
F069767Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000016111F069767AGGAGMIKKVLLAAILALSFFSAVSMEGIIPPPTCNPCPWVN
Ga0335085_10000016188F022233GGCGGMISLKPEQEQLLQAAIKSGLARDTDEALAKALDALRERLPQARTDDDVAAAARRLGTFGKRHRLSLGDITIRELLRESRP
Ga0335085_10000016382F002976N/AMGAATVELQAHYTFTLQSPVRLRFQWPLVIAPRVSAEETGEAQADQGRRLTAFQQYACNKFGAACRIALAVQRAENPRGACEIYHYNTDGTLDWGYFQINTVHLKRAGVNLRDLLDCKANIDFAYKLYTERGFESWTTFNSGAYRQFLRKF
Ga0335085_10000016543F062813N/AMRVTITEFRRNLFALVGRVIAGETVEFVHQGTTVRLVVPERSAPVKLDRLTPRRTANSKMTEKQQRAAEKKLQTEMWSAIEKDWADI
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