NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314709_10144038

Scaffold Ga0314709_10144038


Overview

Basic Information
Taxon OID3300032755 Open in IMG/M
Scaffold IDGa0314709_10144038 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad10_28May_surf (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Seawater Microbial Communities From Espelandsvegen Fjord, Bergen, Norway

Source Dataset Sampling Location
Location NameNorway: Bergen
CoordinatesLat. (o)60.2696Long. (o)5.2187Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001282Metatranscriptome731Y
F007905Metatranscriptome342Y

Sequences

Protein IDFamilyRBSSequence
Ga0314709_101440381F001282N/AMAAASLVVTLVLSLIGMAQAKAFLQTASLLAQERISEEDVQTSLLAEIEGTFGAGSASSRVKHLEETLGPIYKALPKNGQGYLGHATVRYALHRLFIQKHGWSIKGLDVEGGHRNSTSGAGLLKEQVPAYVQGLFEKRLGGRGFGLHELGVLAATIEHLVHAEAVKRLGYAFKVHDKLPTSYMSADDADSVLDTYMTAYILGEDLRNMTLADAHAIEKLCLKCISPGQILRSLFARLEGT
Ga0314709_101440382F007905AGGAVSEASAAQQETGDYDFSLVARVADRIGERFGKFQDQECQQIKADLVKLEMPGTGRVRLSDFYKPALQGHWQFQESVPYLRQLGALDESDAKNPQVIIANYISSPSNCIASSSSYSVCCIDECEGLLGHIEQNIAAPEATSTQIAALVSELSSSSVTAPRKLSDKLLTRLGEIAANHGGAIPLHGRLFAQWMH
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