| Basic Information | |
|---|---|
| Taxon OID | 3300032515 Open in IMG/M |
| Scaffold ID | Ga0348332_11339602 Open in IMG/M |
| Source Dataset Name | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 978 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.0431 | Long. (o) | 13.617 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000670 | Metagenome / Metatranscriptome | 946 | Y |
| F004082 | Metagenome / Metatranscriptome | 454 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0348332_113396021 | F004082 | AGGA | VRRQPVRIVDGRVQGGYSGAFELICPGCGDNPYVDYPEVPPQLQRLRGPLTLDAALEAYDKHLGPLPGPNGDSAGS |
| Ga0348332_113396022 | F000670 | N/A | PRLLAGRNERIMTAAALLARLGRAGRILAYDQLRTWVVGQSVRNALQTFHGRWAFDPDNPGSGEGFISDRQMRALNITIRRAVHEALRQTDKARNVVAQPRRELYPAEQEALDFCEFQLGTIRDYMEPPGSPELEKAYEAYVSTPDVNR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |