NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315287_10824731

Scaffold Ga0315287_10824731


Overview

Basic Information
Taxon OID3300032397 Open in IMG/M
Scaffold IDGa0315287_10824731 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1089
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006693Metagenome / Metatranscriptome366Y
F025460Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0315287_108247311F006693N/AALRQNRLGAASNFVAGGPSIANLAGARTAQQQGAMQQYIQANQALPGGFNQQPSTAANFYQAVDQQIPVQLTNAFNQLYRSQADYGASTYGAQIGAISRQPSGAEQFGQIATGLGNLIKI
Ga0315287_108247312F025460AGGAGMAVIDVPELMNMFRQGDIDKQAAAEAQRKREIEDREMALKEQPDVDFTFEKGGLKVKGKLKDLPALSQDPNFAPYLAGIGSTITNEQSLENEDINAQREAINERLTKLSKEKLKQELELAKGDTRTGAMELGLGLVGMKPRSDVMKELEAERGVLRGRMAELGFNRQSGQMETNVPDYQSEAMPLQATPQVTPQVAPETPAQTPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKLGR
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