NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100002801

Scaffold Ga0307471_100002801


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100002801 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10169
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000789Metagenome / Metatranscriptome891Y
F002089Metagenome / Metatranscriptome595Y
F004058Metagenome / Metatranscriptome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_10000280112F000789AGGAGGMAQRSSFAEMKAEQAKMTASWKADGRLSEAWVVADPEVVEIFSAGIAFGMEVGRRGRSDPAYSPDEWRRALREAVEKAAALEDKLEKAKEEMLKKETD
Ga0307471_1000028014F002089GAGMKPLSIRVLRLFDKMGTDRLDLHVLFEAGGNEPSKRQRVLDAIDELVREDMLNACGGDFYVLTEKGKRQIAEF
Ga0307471_1000028018F004058GGAMKKIMMWCVIGLISVGSATWSQAQTTDGTAKAIAALEEQWFQSQKTNNPDLVAPLLADSIVNTGTPPSSVAAISFATT
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