NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315276_10082503

Scaffold Ga0315276_10082503


Overview

Basic Information
Taxon OID3300032177 Open in IMG/M
Scaffold IDGa0315276_10082503 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3230
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030143Metagenome / Metatranscriptome186Y
F056343Metagenome / Metatranscriptome137N
F098715Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315276_100825031F098715N/AQKLAGVFGAIAAIGSVHRWQGSPTDLDRVKLPALFFWDEDETRDKRNRLAMGTLKLYVAIFCRLSPSGAASFPDVADNLQGTIHNALLGTSELQGLVENLQEERVWKEYHDQYGVLFMSFTLTYAHAWGDAFSTTY
Ga0315276_100825033F056343AGGAGGMPEQITDHQVLSSYLAEEQVDGFTVKPWTIKQLILVMPILDALVQELKTQGVTLDNLGEMFESQGLAAAKDIIQTILPRLPEFLAITLRIDRKQAEELDLGLGMQLAVKVLKMNMDHLKNAFGLIMSQMGVLIGPEATP
Ga0315276_100825034F030143N/ALASQGHDLYQLIDGYPALMVKGLVAASQVRSRHRLMEQGVALTVAVTGGLDLAFNQGKGKVLERWLKEMSGEEKSEPPEERPKMSDRAFSFFTGMPRQVPDRPAREK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.