NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307470_10002584

Scaffold Ga0307470_10002584


Overview

Basic Information
Taxon OID3300032174 Open in IMG/M
Scaffold IDGa0307470_10002584 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6913
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008142Metagenome / Metatranscriptome338Y
F016892Metagenome / Metatranscriptome244Y
F057963Metagenome / Metatranscriptome135Y
F075145Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307470_100025842F008142AGGGGGMKRYVLTLAWILWAHETAQVGDQIVDRGYTAIDSFETRQLCHAAVTDYAGLKLVRQGKIRVDFSCLPERTSPKPSRSAVG
Ga0307470_100025845F016892GGAMHWLSSRSVAIVWLLAALSLVGWLIVNLDVAGWIILVVTVGLMAFELTRRREGQGARPKARVPDKPTG
Ga0307470_100025847F075145N/AMRDAGRRARLLHVAIWLATLFFTAMLFVPLLREALRRVTDLPSGSHF
Ga0307470_100025848F057963GGCGGMLKWRPSVITGLIAVLALVSVPVEITIGLVEHTPLVPPGRLASLLLIGSCLLLVGGGLGLRREEAARAGARRPTPSA
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