NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_11115974

Scaffold Ga0315268_11115974


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_11115974 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)797
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F013409Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_111159741F004111N/AMKEKIKQVNELCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVMQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYIEIAETFAITRALSFMGILLEDVTSKEEYEELDIPVQPMITKGTSSANIRYDEGTINELIKKVHYAPHTAKLDFLWRANRELIDQIKIKDLATYNSILNKFNSKRDEITTQNEV
Ga0315268_111159742F013409N/AMNGTVYNLGFTVDRYDARTCDKLFDSITYKGKTSGRNKQGVFYKSKEVFAHSCSIEKTTKGNNERKNKTS
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