NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10036383

Scaffold Ga0315268_10036383


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10036383 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4724
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009398Metagenome / Metatranscriptome318N
F062574Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_100363831F062574N/ATTGDATVDNASNFEDGAANQSTLAATSVTVNQITKTFTVTQQELNQGFALSDLAQGSAEIFALGISKKITAQMTAALFGAGTVIGTAANFDSSDIPAILALAKNYRQKLLLLDGGHMARLMFSGQLTAAAGTNPFPDSRYGPLNNGYFGFANILEQNDWTSAIANTVGFVCGQDAIAVASGLPVGMIAGEFLEQRTVELSNGLSVLLSVWYSRASRAHMASYDIMFGAAAADTTQAEVLITA
Ga0315268_100363839F009398N/AMTTIGSSLQQGMSVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGGYYNLELGAKTK
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