NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10009452

Scaffold Ga0315268_10009452


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10009452 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10113
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003800Metagenome / Metatranscriptome468Y
F009579Metagenome / Metatranscriptome316Y
F052355Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0315268_1000945214F052355N/AMAPPDGAAVSDDAMGLTQRELLMEMREDIKGLKTTVDAIAKDQALGVERRASMQRSADSIYARLDAHDRDLDRMQAWQHRADGALVLARWALGASLVSLRRGARPPRAAGRRGG
Ga0315268_100094527F003800N/AMGDERRDDAADRRRADVYSSARIGAAAALTLVLVVLLVLDVAVAGYDISPGILLPLLGAICALLGLEASAVWRGVR
Ga0315268_100094528F009579N/AMSGVELILAFLAGVAMGIALDRWLLPPLVDAWIDRLRRHGR
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Institute for Fundamental Biomedical Research
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