| Basic Information | |
|---|---|
| Taxon OID | 3300032160 Open in IMG/M |
| Scaffold ID | Ga0311301_10316181 Open in IMG/M |
| Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2482 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002761 | Metagenome / Metatranscriptome | 531 | Y |
| F003859 | Metagenome | 464 | Y |
| F004817 | Metagenome | 422 | Y |
| F007120 | Metagenome | 357 | Y |
| F015428 | Metagenome | 254 | Y |
| F076760 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311301_103161811 | F004817 | AGGA | MPNCTAVVQLPEILRKKSSHLVKLAGKIDSFSLLLRETPEGELKRSIEEQFHTMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASGQLEPGDVGTAPPPKRGRLCETCCFFVGTPEEQSCETTVSLSPQDLVLTF |
| Ga0311301_103161812 | F003859 | AGGAG | MNEVNAQCASTLGRSWPGASLYKSFKRGWHWRRLKWAVVAASEAAQGHEANGLPPGSREFKTLFSEVASKVQEYSTESGDPLDTLKARLPALCALERLANPAPSVAQNKAGLTLGILIAALLGPIGIGALIGLGTGMAHWISHLFG |
| Ga0311301_103161813 | F015428 | AGGAGG | MTGILELFALVEVGSGIGFLATWRNRLLASKVNYFRPSHNRKSPLDRLVRAQTGPVITRQDQLCVKVADGLTVLVRRLVVLDAFRQLMRAVFLSNSPLRRNLRTKKKVSYG |
| Ga0311301_103161815 | F002761 | AGGAGG | MTFTPSATSSFLAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQAVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLERR |
| Ga0311301_103161816 | F007120 | AGGAGG | MKTLIITLTAACAVVAGYFGLRYFTGQDLGFTPARKYVRNLAKNLLHTEITAAREAGTTPASTSEQSA |
| Ga0311301_103161817 | F076760 | AGGAG | MSLVTRYRLFWAALMAALLGLAFWKNSQSYPHKSPLWRLGKALIDTGLVILLAIYAPALLLMYVVIWLTSPFKNKVLQVSAGFGVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |