NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10132316

Scaffold Ga0311301_10132316


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10132316 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4626
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y
F015428Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_101323161F015428N/AAEMCSGIGFLVRWRSRLLASKVNYFHPPNNRKSPIDKLVRRQTGPVVTRQDQLFVKLADGLTALVRRLVLLDAFRQLMRALALPGSPLRRKLSRRKRP
Ga0311301_101323164F007120AGGAGGMKTLIIAISVVCAAVAYYFGLRYFSGRDLGFTPAKKYVKNLAKDLLHTEVTAAREAGATPASTTEQTA
Ga0311301_101323165F005112AGGAGMSLVTRYRLFWAALVAALLGLAFWKNSQSYPGKSRLWRLGKAVIDTGLVVLMVTYAPALLLIYVVMWLTSPFRNRITQVTTAFASVLIISHLAGVVFEAVAVLGVFGVDLLTGQVLARMEKRERNNRARRA
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