NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10017951

Scaffold Ga0311301_10017951


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10017951 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20528
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002897Metagenome / Metatranscriptome522Y
F009276Metagenome / Metatranscriptome320Y
F028885Metagenome / Metatranscriptome190Y
F054181Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1001795110F028885GGAGGMWILVLLLNLLGGKNFLRFLAGWMLIMAFFLYCFVHEAFDQPRPTQRVAVPHMERRRVDPVSASTSEH
Ga0311301_1001795113F054181N/AMDLNPPPRRRKTRSDLVHLRSLLTVQPATNTGQVTAAWREIEAGLARGMKLREVWEAAKLDGLEIPYPQFRVYVSRVRRRRQGSSTSATQPPHALVNGERGVPAPQPLDPFNNLREQREKKEQSGFEYDPFSINKNLIG
Ga0311301_1001795114F002897GAGMPRRTIRLTGDVDQQLQSTAKTRGYANASAFLRAAINHELRGREDTIIGAEERLATSMDQMRREIFRLGRAQQALFAFVDSLAKILLTCVPEPGGEAMEAAVTRARGRHARLLKSAGQAMSGDSHLAMQELVNDGEG
Ga0311301_100179517F009276GGAGMGVVIIPFDYEQLPEAEQETIVPICIASIDRHGNPIATVWFEKGVAPVQDQLRGLARIKLGDVQRVSELAEITVHKLWERHGENAGIWPWRRVLVRAMWEARDLAAGNSPWRIKHTVSLAMDSLERDLYNNGIADPRRYEEIYHQQLLLDLVERRIAEDHRPEIREVFKMLRQGYNWDEIGQRLGNPSPEALKKRFWRWMHHNFPTKPQ
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