| Basic Information | |
|---|---|
| Taxon OID | 3300032160 Open in IMG/M |
| Scaffold ID | Ga0311301_10002760 Open in IMG/M |
| Source Dataset Name | Sb_50d combined assembly (MetaSPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 65896 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (86.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008196 | Metagenome / Metatranscriptome | 337 | Y |
| F024747 | Metagenome / Metatranscriptome | 204 | Y |
| F025722 | Metagenome / Metatranscriptome | 200 | Y |
| F029881 | Metagenome / Metatranscriptome | 187 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311301_1000276023 | F008196 | AGGAG | MRNLVLVVLSLVVSGSLAMSQSKVDTKWHCLKATAEHKLDVGDAPDHSLWIGQGSCEATGSSGDLKEKSGSFTEFHDAWKTSFNFHGYYNATTDDGDKVHYTYEGSASTEATKPPSNKWKIVGGTGKNKGIKGSGTCAGKGNADGSYDWECTGTYSVGMAKMDKMEKMDKMK |
| Ga0311301_1000276025 | F029881 | GAGG | MPILLMALLALLVFGVIGILLTAAVVLENSKRARVARSNAAHPVTPGAVPTLNPKLR |
| Ga0311301_1000276056 | F025722 | GGAGG | MLRPVTSGLQPFRFVSLAADDHRRLGALIGQQSSQNESELAWIEKLRAASAQQREPRRWRFKVAELVGMLMIGLATAAYLLHLALLK |
| Ga0311301_1000276057 | F024747 | N/A | MPYFPPPQALRRAPRTSFGETTPAVLRCQDGRRIRGKLQVISLTGGLLYLSRPVDKGAQIKLMFLTRSGSVLGAAEMLSCDTWGLQPFKFVRLYDDDECRLQAAIQSSLDQNRHDHGQIERYRYW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |