NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315910_10000119

Scaffold Ga0315910_10000119


Overview

Basic Information
Taxon OID3300032144 Open in IMG/M
Scaffold IDGa0315910_10000119 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99005
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (14.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016688Metagenome245Y
F024495Metagenome / Metatranscriptome205N
F030476Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0315910_1000011975F016688GAGMKKLQLVELGIIATALIMGYKMITSLLTLMTSLLFGFGSGIGRNLMMAILPTVLFFAFYTITFFLIARNIKPLAKFICRDPEESLELKLNKVAVLQVIIIAVCLSSFLQTIPDIIQYIAGKFLNPDQLGADFEPPEWRTGKIKFWNSVIGFIISVILLIASKNIASFFGKEEPSYEIGGEKIESNL
Ga0315910_100001198F024495GGAMKRKILLLTGLIFVLGSVFGQKDKGKGEQKFDKRLLCPFENGMGREPKEAFSWDPPDKKVIMISRTDTAIRSCIDGKVASINPTEDGRYEIVIFYKDWFFWYYGISKALVNVNQQIKAGQVLGNYTFGQEMEFRMFKFEEPMDPREFLECKVAEEKKE
Ga0315910_1000011996F030476N/AMLVTALMGFLIDLKKILEAQKKSPFLPQFFIGVIVLILGVALGGLFLLHSSKAYQDTIDGIKTDGVLKSEIGTINGTGLFPAGFGFLEFAYNVGHNPSTFIITVRGSKAIKDVEITLYKTLPTE
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