NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315910_10000048

Scaffold Ga0315910_10000048


Overview

Basic Information
Taxon OID3300032144 Open in IMG/M
Scaffold IDGa0315910_10000048 Open in IMG/M
Source Dataset NameGarden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)197380
Total Scaffold Genes182 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (18.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006472Metagenome / Metatranscriptome372Y
F020135Metagenome / Metatranscriptome225Y
F069970Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0315910_10000048120F069970N/AMKTYNAKQSIKVGDKVTFDNDKIEIFKAETSSNEKAIKQYQQLVLGGVDQVGIVKELGGNLTTVSYPDGWELPVPTKYLIILPE
Ga0315910_1000004837F006472N/AMKIAQHFRAFLEKNNYLQLPQIGKFEVVGENPAGAENGHSKWINFSADQNQTTDSELVNFISKNMKVESNITASDLSCFISSIKEMLILGFEVEIPGIGYLHFEPGNILKFSGKNIYKKTIPKGWKRIPAGMSASFWL
Ga0315910_1000004852F020135N/AMKRKIKRSKLVKVLRKLKIDAILPFKEKPSDEIKESKEKASELFSLFTADIIKEDIEFVR
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