| Basic Information | |
|---|---|
| Taxon OID | 3300032138 Open in IMG/M |
| Scaffold ID | Ga0315338_1040521 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1893 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.6953 | Long. (o) | -122.3565 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020190 | Metagenome | 225 | N |
| F054101 | Metagenome / Metatranscriptome | 140 | Y |
| F066139 | Metagenome / Metatranscriptome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315338_10405211 | F066139 | AGAAGG | MDVVRLVERIFKIIRARQTQVIEIITSNQVKDWNDYQNHLGQLDTLNY |
| Ga0315338_10405215 | F054101 | AGG | MSLCKNCEHDCHHSDSGKCASCDCLNCEHDIEEALEKLQEVIKPVATVEFEPDFDLTEH |
| Ga0315338_10405216 | F020190 | AGG | VTANKTEKKYRQMVSSQTILDDVFRFAEKYKNDPMAISASLMVVAKTIYLHRLGPEQTQLMIQLFADNMEQPYQIEKATLH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |