| Basic Information | |
|---|---|
| Taxon OID | 3300032138 Open in IMG/M |
| Scaffold ID | Ga0315338_1012985 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4455 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.6953 | Long. (o) | -122.3565 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015347 | Metagenome / Metatranscriptome | 255 | Y |
| F029468 | Metagenome / Metatranscriptome | 188 | Y |
| F058443 | Metagenome / Metatranscriptome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315338_101298510 | F015347 | GAGG | MSTLHLRCQRNAKMLLDSASEECKQMHMDAKEDAMYPDMDTIYSSAEEMRRFADRLNNFADELMVVYRKMDHHQHMIELDDLRSESYAN |
| Ga0315338_10129856 | F058443 | GGAG | MRTRGQTVRLKNKSTGDEVRLLVILSDSKQGYLASDSLNKAREGNWAWYNLNEWSEIK |
| Ga0315338_10129857 | F029468 | GGAG | VTFEIRLKEQAEHEFDKFDVEDNQLKMNEACTGFVSEFIDCEGEVYYSTAMKAMNAVWQYERSVKDSAATMVGPEWDRDKGVVGKWRYPHLRKNDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |