NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315338_1007234

Scaffold Ga0315338_1007234


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1007234 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7192
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F006818Metagenome364Y
F055659Metagenome138N
F074026Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0315338_100723410F074026N/ADDKLDFKPNFRRISIYTYHPKWIPMPEGSEPIGYEVAYQLSREFKRDMYEKMDSQKNAYVDVVRP
Ga0315338_10072347F055659GGAGMTGYANSPAGYMNPVAVDKIQHPDYDAKAAENITMRVVQYLYPVIKNSVEMLDALCKETDVQIPTDLADNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLTLHEEWSTEDNAHHSVLNWQNPYGTDGTLQQAPPVTQQQMNPYQQGYGQQGYGQQGMMPMQGGASMFKPWTWFGMGAGAQQQIQPWQLPPPQIDTLHNGESYYTANGGGPPPLAQQQGYLTLPIGAIGWNMAGQPIDYNGMVVATTGEKLMNTAISKIL
Ga0315338_10072348F006818AGGGGGMAGPPQMTTFTRKPQQAQADEPTREIAPAPNVLTRAPVSQAMMPSAEAMSDDELDLYVKRLTMRHKRLSQKWWGLRRKHGKDECPYCGMSTGGGFCKIHQRDYDEYLGALSTKQNRSFGL
Ga0315338_10072349F004336N/AMLFSTGRYPSTMGAGGQQDVEFVRYIEWVWFKRCMWLLGVSLGFGGIGLYVGYYYDEVVLEYGMAIWGVAWLYNGFLLFVMAVSIILSMLKALVVKAFISPEVQVGQAATRTAQMMRKGG

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