NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315338_1000625

Scaffold Ga0315338_1000625


Overview

Basic Information
Taxon OID3300032138 Open in IMG/M
Scaffold IDGa0315338_1000625 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69835
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (81.72%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001136Metagenome / Metatranscriptome767Y
F004849Metagenome421Y
F011853Metagenome286Y
F012880Metagenome276Y
F046984Metagenome150Y
F053333Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0315338_100062530F004849AGGAMTKSEFKRKVGMGFFSCEWRNNSGSISKVKRGILGGYAWRHTNNPVPTNVKEHNDYVLAFRVGNGLLPEHRRWANINPLTVTKINGVAV
Ga0315338_100062531F012880GGAGMKFNVITLIWSTALVLLTFQLFLLGYDWEFTNTIVYKFVLLLNGFMFGVVITDWTTND
Ga0315338_100062533F001136GGAMDQDLIRVLEKIANSLEESNDILNRIASHYDGVVPVMTRNAKRAESQAEELERGFGQQIKDIFRPQEH
Ga0315338_100062545F053333AGGAGMSLLETFLFGMCLGSLCGVFFFMGWKLGIQNYLRRARAHVAKYGDKYL
Ga0315338_100062560F046984N/AMDVWDPGEETTVFSQIKKLIAGLYRALKGWVVRFYPGNLVFLAKDRFYAMCEHGGSKISNYGWHKRWNKRNRKRYKHG
Ga0315338_100062561F011853AGGAGMKTEDIKKKKEMLVKQHNALQEKITEGKNALANMQAQLNGLVGAVQLCDDFLNNPEEPKKDK
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