NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315336_1006969

Scaffold Ga0315336_1006969


Overview

Basic Information
Taxon OID3300032132 Open in IMG/M
Scaffold IDGa0315336_1006969 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11182
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7507Long. (o)-122.0138Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045803Metagenome152Y
F089570Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0315336_10069692F045803N/AMLKLFKISILLLFFSLTNPKLLISEGLNERITKAEKQVSDAEDAFAIGSKGHFKSLEDLLDVRKKLVKAKEMYAEVKSYEDKLGTAHYKNTTIRILDDLEPLTKYIIEHSGLDPKH
Ga0315336_10069693F089570GGAMRNLYFNFFLLILLLFLSLDKSFSENEFPPLDLNKKQKTIVDNALSSCGDVNFENLLNARKEKFGLNEPDKTINRKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSIKDDRLYPAIAYYIIRDFAFYEHGLCKSLKNHFDTYKVYKEFYLKTKNKELDPIYENENNLNFFYKNSSSARKRLLLAIQSKKRLLEKEQFLLKNLEIFTNYI
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