NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316053_105368

Scaffold Ga0316053_105368


Overview

Basic Information
Taxon OID3300032120 Open in IMG/M
Scaffold IDGa0316053_105368 Open in IMG/M
Source Dataset NameMetatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)812
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047246Metagenome / Metatranscriptome150N
F055351Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0316053_1053681F047246AGGMRSYRLRATILALACLTWASPALPQNPSTTPAAPAQGVPTPPADSQSFLDGLRRVGVMAGQVVECSSDADRQEQISRAMDLANLIAIHFGLKAAFTFTGALGYGSGRPFDKATCSQAIDGWKQIQAKYLNK
Ga0316053_1053682F055351N/ATYNGSFTQNLSAPGSNCPNFPVAPYLTIQNGVARFAALDITYQGYVTPQGEVRMQSPSGQTFVGHIDSYYTLTGQTTGSCVYNAIWHKGGQGPFLGH
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Institute for Fundamental Biomedical Research
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