NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308173_10331891

Scaffold Ga0308173_10331891


Overview

Basic Information
Taxon OID3300032074 Open in IMG/M
Scaffold IDGa0308173_10331891 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1318
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018768Metagenome / Metatranscriptome233Y
F023391Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0308173_103318912F023391GGAMTRMELTQVYLEPGQKKALQAKARAHGTKVAEEVRRAVDAYLAGISPEHLQLLDAATRTAERHLKEMVQELDGINGKLDQAFAQLSRPGSSLRKGRR
Ga0308173_103318913F018768GGAMSVITEILDRLSGIEIVKERVRDTGARIEQWTSQVVALDRQVQQIDRRLVRIETFAEVAGATRKKSRRLPKPE

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