NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10252045

Scaffold Ga0315315_10252045


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10252045 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1646
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F012584Metagenome279Y
F099447Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315315_102520451F006793AGAAGMTNTRSNNEQMEERINYAADELAKGKRAMDISKKLAFKYNVSIQQARDYVRSAKPVLTDSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSAYDQHLFKNFSEIKNKIQHSDLDALDNTDIPF
Ga0315315_102520453F012584N/AMKLKPKPYLPEDVFILSDEELPKEIHTDRFDKVMVFRKDIGWTVIPLKEVYTYFKHMKHTHWTFTPDTPYD
Ga0315315_102520454F099447N/APSNGLANLTNGFLMSMNLLHKKLMSYKQTEGDKSDEKLLRKLLTEKMPKKDANKIINHCFSDLIKWTYDDAVFQLTQIFSFTDEECEQLLKENDIVSSSTKEVIMNPEPNFNATAPRDVRDLADNLWHARKHISDAKKLISATALTQDDYDNQTAFQEAVVQRANVNFHFISITKYIDEMSEYTKGHVPPLK
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