Scaffold Ga0318510_10038466

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0318510_10038466

Scaffold Ga0318510_10038466

Overview

Basic Information
Taxon OID	3300032064 Open in IMG/M
Scaffold ID	Ga0318510_10038466 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1642
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes → Pseudorhodoplanes sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001498	Metagenome / Metatranscriptome	683	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318510_100384662	F001498	GGAG	MKGTPDNTVILHWDECQTAWAELPWRDWVRFRGFGEGGASLLAGAEAGEHYFLVCVLGDAGELANVIPHRYVLSTDGRLVHGFDGLGASEREEYYRIQRLLLPTIEDSERCNELSSCGFTVNLPPLHTVQPLLRALPGLAGAQHGAACWDFLSAIGVCHASTRAN

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