NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310344_10059315

Scaffold Ga0310344_10059315


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10059315 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3111
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N
F052647Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0310344_100593152F052647GAGGMEFTEFLPIIYLTVGLTATYFIGKLVLNHFTQIRKVKRSIDVAKDKKSFENGLEDLVDKSPDMYAKVIQELEYLKRNGATEEQMASLQKKADLLKTVVENQEIINIAGKPIIRYLGKLVGGLGR
Ga0310344_100593153F039681AGGMSEYELPNPNKLRIKPVYGVDSYGHDLALPLLISQASNVATLTPSTASFHQTLHDSARPIDETLMFISESDKCELLHGGNDTNFDQTFIIQPDMSAFSYKLALNMGFGLKVSAFTSGTVNLGNIHLTITELGEGAGDTVVEDLVIDAGSSNLTATGEQIVVFHADIIRPIRLNKARPVKMRIQTVVEETGTNTWQVGMLPCYPLIPTAVPKQWLVSQLEAHLHATLDHAYPVFRDQNNQELMDYSGCSVEGCN
Ga0310344_100593154F044724AGGGGGLTSWDYATPTSLGTGVAKTEINGGNPLTKPTQAQTLIEICPYMASTGALTAGQTYLTKGIIESNSINLLPKQFLVPPISGGLGTFTSSLTPMLDTIETNTPLQVGSTQQFRSYGQNFVANTVANKLGIAFHYSTAQTSAKEMFYDMPNNETSTGTSATTVSGEDLTINDGVFLEEITPALVSGVVTVSESYMGEIKVSSNDFENSMPLNIPCQPMSTALGSAIGVGTPKLPRFKNIHMGMKSSTTISHSLVLEEALTASGNFIVGYGYTKS
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