Scaffold Ga0310344

Basic Information
Taxon OID	3300032006 Open in IMG/M
Scaffold ID	Ga0310344_10000153 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032006 Open in IMG/M

Scaffold ID

Ga0310344_10000153 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56472
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (54.55%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

56472

Total Scaffold Genes

88 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (54.55%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7656	Long. (^o)	-158.2256	Alt. (m)	Depth (m)	200
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7656

Long. (^o)

-158.2256

Alt. (m)

Depth (m)

200

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F064801	Metagenome / Metatranscriptome	128	Y
F098028	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_1000015341	F098028	GAG	MGIFDWLKREKFVLPPEEAQEKLVREIEEKLKTATGSEKTTLTYMLANQLMFLNQIKNKKKPKKPIKMNNRGKWVWVEDE
Ga0310344_1000015342	F001066	N/A	MADDIFKIKKLDGTYIASEDKRKTLSKFNAAKHFKTANIPALCDQCVYRSIETGGNGKCPKYEAGAACGIRDDFVQFINEIDTRNPEDLKSMMDMIAKLSFENVLMALTQSKLDGNIPDRNTKSEINTLLNVVKSINDMNSKIVVTEKAEYNKEGDIANIFRQIKAQKSGD
Ga0310344_1000015382	F064801	N/A	MGFKENLTNAFKSLRGINKSYSETTVRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNIDSLRIPIETLNREIFKNGFEITEKFKYKCTVCAKEFQYKPLADNVADDQPHETNESLHPAIGSDRTNKALPTAQQLQCDNCGSTDLIRPDPEHRKILENLLNTPVNGNEQTLEDIARQLERDLEIADNAYLLVLKNYFINDSTGEIDPKKTEIKELLRIDPPQVAMIADSDGRIGYDDKHNPVFVCPRFEHRDKRLTTDRCDRCDSRALKAVAEVNSVYSVGIPQPKRVIYGQGEIIWKAGKYKPGLIYGFSPIYSIWSKVMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKGGKNMAQWLDFTGSLKELEFTAIRKELRMIIGAVYGVLPLYFGELPTGWSQEGLQVTITNRAVKWAQDVLQQSFLKKLALLQGVDDWDLKLKTGEETDKLRDLQIQGVEIENMTALQNLGFEITRTHTGEFKVSKDPVISITDMMAAEGEPTKKPGGRGRGTAAPKEEQQRFEGEPKHQRPSREGGMLQGSPEKKPAASVRRKGDLDLTSKFKDGITPDNFELVKNTLQNSLDYGWTKTKTVEQLRKVARMTVRQARECVKNELGEQRRWEDGIPEEKEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310344_10000153

Overview

Ecosystem & Geography

Associated Families

Sequences