NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_11515413

Scaffold Ga0306922_11515413


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_11515413 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)670
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013920Metagenome / Metatranscriptome267Y
F034744Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0306922_115154131F034744N/AAHFQRNPLGRGQLAVFPRCSLDPYQFSYGRFARALKNSQLTCGDVIIICETAH
Ga0306922_115154132F013920GGAGMDSSLTPNLEDFELSLTPNLKHSEQISRSMRVLSYEEAKEGVSRYIEEPLQERGGLTSWDLSFAEYIEEHKNSKLLFCQYARGVGVVFSPADHHGIWAAQREGTLSKGIVPDHLVTFLEG

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