NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315901_10164727

Scaffold Ga0315901_10164727


Overview

Basic Information
Taxon OID3300031963 Open in IMG/M
Scaffold IDGa0315901_10164727 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1959
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F059881Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0315901_101647271F000716N/AMQYETDRYSQYQNYLYKRALYGLNALSEQELATMCSKKKQRIVNVYKRAQVVINKLKQEFTIRYTNFIFKTLFPNSPLTDSLLACSEFDEKFKNTLTFKDLNISKEDIITIFIAEGILPKNFLSLDKDPNQLPRLKNQVV
Ga0315901_101647275F059881N/AMTKDQVQEEAIKATEGKQKCSVVLGTGVGKTLVGLTHIEHSTTELMRCLI

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