NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10352726

Scaffold Ga0315904_10352726


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10352726 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F032581Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_103527262F001129AGGCGGMEFVDAAVSGKNYDFLVVNAAATFTTLTGTGSENLLTAYALSGKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0315904_103527263F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSENWTLSSSVSLTRFVESRDDRTAGWQATLTFEIPFGHSVCEIPT
Ga0315904_103527264F032581N/AMNKGMVRRTSEESSQMSMEEITRLTDKVKNDAEWYSERITRYLMENRNSYPLWNSPPSALDTIYPNATNYRTGMVLDRNRRMGISNLDYPYPYGPLAGCNDC
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