NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315904_10042689

Scaffold Ga0315904_10042689


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10042689 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5142
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002738Metagenome / Metatranscriptome533Y
F006619Metagenome / Metatranscriptome368Y
F044444Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1004268910F001018N/AMSQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAKAELESCADLRSEKVDRIYYAMAAHEDALERIKKESDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVNSDPEFWHTQERADYCIEEEVTTTKQVVVRSMSGEVLSIRTEPKTVTKILPNLDAIRSAYQEGRQLPSGVKVVQEYAVRSKRIFNEPRMELVSSEYPDELLREDSGTDES
Ga0315904_1004268912F002738N/AMSIDTYGLSSEQYTEFFHKNIRSAAKLYLDACNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPDALKESDVYGMVPSHQEIIDMIETLVTYTEALDAKLQALTDYVSNLVAGLEGLATTLDDKVD
Ga0315904_1004268914F044444N/AMNEAIIEVSDDILEYARQLVTEPLMTKPTRYDLDLPEDTHWELVKLAAELKMHHEDYAQNVLIGHVESELDRKAQA
Ga0315904_1004268916F006619N/AMFGEPTCSCGSFQRQLSNLSSFQEEIEGFRPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSISDGRFVLLYTNQGAQAPLSHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGIALPQLKAAIKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.