NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10037721

Scaffold Ga0315904_10037721


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10037721 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5532
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022640Metagenome / Metatranscriptome213Y
F039396Metagenome / Metatranscriptome164Y
F049578Metagenome / Metatranscriptome146Y
F081027Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1003772110F049578N/AMRPIKYKNLGAGVMIRVPQSVIKILPYLQDVMQQLEENDRDSVDVIMQVLSDVEDRIN
Ga0315904_1003772112F039396N/AMTTTSFYQGQSYSKFDSYYELEHDDVMDADDYERREYYRNGWNEEQYCNQRF
Ga0315904_1003772118F022640N/AMRIAFLIATLALGLRLASAAHATANEYQEQQADRFCQVDPNFCK
Ga0315904_100377214F081027N/AMSKSVMLSMLAQGNTGDEILSILDALTSDNVSEGYNSEPTADVIDF
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