NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10022542

Scaffold Ga0315904_10022542


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10022542 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7509
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F040073Metagenome162Y
F074791Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1002254210F040073N/AMLKFEMSPEDMFWQEKMIRSINDCSSMSELKEMATLLTKIATQRQIAIKGLVADAMELMKDNYSHKLPAIND
Ga0315904_1002254212F002333N/AMTTQLQQQELNAAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRDLIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDPAKITTLLQSDQTDIGHLVAPDGMRLTNRPIDMDSELDDDSKQDSMFGKPTCSCGSFQRQFSNLSSLQEEIQGFRPGCIHLTWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSISDGHFVLLYTNQGAQAPLTHWRNYKPNEVFTQHHAWDLFFNMMDASYVPFPGIALPQLKSALKK
Ga0315904_1002254215F074791N/AMSIDSYGLSSEQYTEFFHKNVRFAAKLYLDTCNILTTEGVGNVDFKTVLDMYQEAVYTANDDCRRYQKSNNP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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