NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310912_10981301

Scaffold Ga0310912_10981301


Overview

Basic Information
Taxon OID3300031941 Open in IMG/M
Scaffold IDGa0310912_10981301 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)648
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013131Metagenome / Metatranscriptome274N
F024832Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0310912_109813011F024832GAGMRPSFIAAARSDRARSDAQPRSTCYRKRDAAIFDLRRREFIPLLGAAAVYPSPAN
Ga0310912_109813012F013131AGGMESPLQLQTLTGEGPNAMKHQAFRWLRLSLGLLLFAAGGGQPGGFDLVAQQIQVMGARQWLGLIAGSAIGPVSQRIAGALPRHQP

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