NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308174_10007455

Scaffold Ga0308174_10007455


Overview

Basic Information
Taxon OID3300031939 Open in IMG/M
Scaffold IDGa0308174_10007455 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6084
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F012379Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0308174_100074552F012379N/AMATAAAPPHLFWVGKDRESVRGWPRGSSLLEMLGDINADVQDALAGERARLREHGNPEDLPLPALWWSPAASAKDATERPLLAAVGAAV
Ga0308174_100074554F005548N/AVLRWLRSLFGRGRRDEASPIREAEAYARSYGERSGEIVSIARQEPKPIPRRTGDMTGELLRRDFELKLDERGKART
Ga0308174_100074555F007088GGAGMQLFLRDPSYTERLAAFLRSVGRSAVVAAPDRVDLDEPAEDAERVELELYLRVWRVLYPDAEVELALR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.