NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100950837

Scaffold Ga0308175_100950837


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100950837 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005494Metagenome / Metatranscriptome399Y
F054379Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1009508371F054379AGGAGMPRASWRGFLRLSLVSCPIYLSPAATRTKPIRLHQVWQPAPADVVGDDLPDRSRGQQGSERSVTRLRADSAAPDGDQSPVATRITLRPHDPGTGEE
Ga0308175_1009508372F005494N/AAATDAAPQEAEAASQRAPAAAEPGPALSEPAPTNEWPQGTRVMVRKGRSWREAKVVTRLDPDRWRAEYPGGGSGMFREADIRAYDPKSDATPAKQPRRLKATASHKSSWSRYAIDPEAIAAGKLPDKAPVVTSEANPHYQKHFDRLFDLAQAGDWDGVCNYEVKGTNSYSKMVARYRQDLLAVHAASETPQ
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