NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100917619

Scaffold Ga0308175_100917619


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100917619 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006594Metagenome / Metatranscriptome369Y
F033738Metagenome / Metatranscriptome176Y
F104334Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1009176191F033738N/AEAKLASEMLFASTPVRLAGDLKNHHRVEVILKDIYREGDRLYVRYAIQNRGRSTYVPGKPGVFTLRSPRSSSSLYALSQSQLVGDGIRLTSQGQAPVKVLNAGVLAKAVAPGDTAWGLVAFEWPARTNSPAVLKFTFPSDGAGEVSAVLVL
Ga0308175_1009176192F006594GAGMKQDMEITAESVLHMVRTQTSSPIPQEGAGIQTNSPARIVELFRGRFGNAYDAGIWKRLSNLFLEPANPFDVKARRQFRQEAIVLGAFILTALGLALYFNLKAIAR
Ga0308175_1009176193F104334GAGGMARSKEPLLIRMLRRGEDAGLLVSAAALMLVEMGYVAWLERLPALPGRAHPAGFLDLP
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