NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100165743

Scaffold Ga0308175_100165743


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100165743 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2137
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F012379Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1001657433F007088GAGMQLFLHDPRYTDRLAAFLTSVGRRAVVGAPDRVDIDEPAEDAQHLELELYLRVWSVLCPDADVEFAVG
Ga0308175_1001657434F005548N/AVLQWLRSLFGRGRRDEASPIREAEAYARSYGERSGEIVSVVPQDPKPIPRRTGDMSGELLRRAFELKLDSRGKART
Ga0308175_1001657436F012379N/AMVTAAARPHVFWVGEDQTCVRGWPIGAALLTTLGNINGDVQEALADERARLSEYGYPEDLPLPALWWSPAPALAVVSA
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