NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307407_10081056

Scaffold Ga0307407_10081056


Overview

Basic Information
Taxon OID3300031903 Open in IMG/M
Scaffold IDGa0307407_10081056 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1963
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014615Metagenome / Metatranscriptome261Y
F064871Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307407_100810562F014615AGGAGGVIDRQLVTLDLARTGPKGDVCPEPATIGTRLRTLGRSTAAAPVAVFGGQGRRAFAVDGREVPT
Ga0307407_100810564F064871AGGAGGMHTQMMQQLVADRLAELRADARRSRHQRVRRAERSSAAGQALARREWR

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