NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315285_10088243

Scaffold Ga0315285_10088243


Overview

Basic Information
Taxon OID3300031885 Open in IMG/M
Scaffold IDGa0315285_10088243 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2746
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053984Metagenome / Metatranscriptome140N
F100413Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315285_100882431F100413N/AMDGLTLKRTPDAIKWIQDSLESSDIDYVLKHGTYTTQIEHSMGTIKLMLNNFQNRVFCASQMVKKDCKNSENGQEIMKSTHYKKNYDANPKIETIRYDTCFNIDLSSAYAYCLFNSGLITKKTFNYLLKLPKMERLTSVGMLATSHVKYFYSGGKCVDFKPYREPTAQIFFYLIDEINYLMQDIKWMLGNDFIFYWVDGVFMKPTTPKSKIDKVENLLISLGYKYKYEKVENFSVNRIQDKVIIDMIKNDESKRYEFSTGASGRELGKHIAKKAMQDLQN
Ga0315285_100882433F053984N/AMENQITTTENAAVSVANEITNFAELVSKSTNLDKLEQVLTLTAEYIELEKPSESFRGIYIGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAGINVGTPVEITYLRKEGNTKIYQVTLLG
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