NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316220_1204618

Scaffold Ga0316220_1204618


Overview

Basic Information
Taxon OID3300031884 Open in IMG/M
Scaffold IDGa0316220_1204618 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032123Metagenome180N
F098484Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0316220_12046181F098484N/AHAWRILFNKPKDAEGCSILTPAQSKGYAHYRAAIQTVQALIDAPKPIWVDLKFEKSRRL
Ga0316220_12046182F032123AGCAGGVTFAPDDKVTLLINTQSHGTVLKSDEATTLVRLDRLSFDMLFKTSELKLRKKENS

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