NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315297_10051837

Scaffold Ga0315297_10051837


Overview

Basic Information
Taxon OID3300031873 Open in IMG/M
Scaffold IDGa0315297_10051837 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3113
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.536Long. (o)-110.4254Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F058101Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0315297_100518376F001897GGAMAAFMDGYEGNKERTDRWIATFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMAAIKTPAADYDYWTTKHGDVPSYKTSEEAEQSGTPSFGSSDDSAWSADATPLCVHGSMRWNQSKPNAPKPWAGYFCSEKIKEKQCRPNWYVMTSDGTFKPQV
Ga0315297_100518377F000403AGGMSDFVEIIYPQQMMARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGFQKGYDKQDNIIWFCGDCR
Ga0315297_100518378F000903AGGAGGMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEYVVAKKLGYDYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI
Ga0315297_100518379F058101AGGAGMTINPKDIHIATDGKIYSFSGFGGVMNCSDCDDDTMVNEYDRQDDGAVMWFCKRCEDRLH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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