NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315280_10000834

Scaffold Ga0315280_10000834


Overview

Basic Information
Taxon OID3300031862 Open in IMG/M
Scaffold IDGa0315280_10000834 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55686
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079367Metagenome116Y
F085859Metagenome111Y
F096256Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0315280_1000083438F085859N/AMTTQESKPKEPSFVTGQEALIYEVERACGQLKKLKDLQLDEPFLRAVAAEIRAHMNHLGVSLQSLTEPCG
Ga0315280_1000083439F079367GAGGMAINLDKAGAKIMKVFKRGGVAGDKFRHKDDIAWWMSRFEALCTTEAEDVVRKAIAKLNEAVARRDEGINLVAQLDRDISEAESEITRLGGAAFIEKSEPMIEELKVYFDNLYESLKHSRPEDVALAARRGRKTE
Ga0315280_1000083461F096256AGGAMTSHKLEAVLAAAVIVTVLTSGCLSALPFSSTPTSKPRDLSGSYDASFVLGGWRPINKFTQVKPNTYVGAYTDTKGQKWNFTVELISSENDSYGRYFELMKQRTDAGYVKTNESKISLGTGQTVFGRVDEKWYGYKASDAANPALCALFFGYDETAQSWVVATAASGAIATKQTSAALS
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