NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10112448

Scaffold Ga0315909_10112448


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10112448 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2321
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023326Metagenome210Y
F058252Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101124482F058252N/AMTTNKTFEPRVICEGTEVSENQYKILFQQKFNQCWVPKKDIRLKENLGNLYGEKMIRIVVPEEVANMLELEGIMD
Ga0315909_101124483F023326N/AKSFPVGLWVYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCAAVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKDCSNFDSVNPEMDKWETGTGVCLFYNGMRSPNFAAPASEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTSDLIRNANTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYVRGTRNRVMYLESQKIIQLSANAAAEFEIQLATEVVNYCRSAGVKPSNFGMDVSGDGGRVGQAIIREWLRFDSTGSAIALISSMGKPTERIAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVLYGVDGGSDLARELCLRRYTIKSKKISVETKDDFKGRTGFSPDLADSYLYCLEMARRYGLVFIGNDKAVPTNRFWAREEKPVEVFSDDDAYSSDDNGDW
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