NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10111909

Scaffold Ga0315909_10111909


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10111909 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2328
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006543Metagenome / Metatranscriptome370Y
F012108Metagenome / Metatranscriptome283Y
F055724Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101119094F012108AGGMINLQLTVREAMYLATNWAYNNDAELYHKIVNSFEIALGVNQNRTVTITGGMNLDNRIHCIKAIRLHSGWGLKEAKDWSDYLVGGWKYDKFVPAESGAKNSITLKTPEAAENLLRDLTALGCEGYLS
Ga0315909_101119095F006543GGAGGMQKFTFSVDVVADALDRESIVDSIRECLSDSLPNDVHASVKAGEVKAFSEQGYKVWRARVTGVTAEVAGDAANPKKSKKETVEV
Ga0315909_101119098F055724AGGAGMKVADGNDKLGKGCLVVSRPVGDTCPPDCDYLDNGCYAEQSEKMYPGVRPAAMQNLV
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