NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10033855

Scaffold Ga0315909_10033855


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10033855 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4913
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031091Metagenome / Metatranscriptome183Y
F032541Metagenome / Metatranscriptome179Y
F061656Metagenome / Metatranscriptome131Y
F061834Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1003385510F032541N/AMSLINEIKEMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKVQFLPTTFAGMSKQQQDEIAMELGAKLNQGLSSLVLAVERDRELKDKTIIGFFIYIEYLDKIIINALNQAAQEPSNG
Ga0315909_100338552F031091GAGMSNLVKVFTCELTGIKTTYTYRKDSVVSGIEKAEFEYPKEYLDEFNKKEKYQKNLPKTKQMFLNPKTGKEVSYYRAKTLGLVK
Ga0315909_100338558F061834N/AMVHKKELRKVVNSYLKGSVRISEKDMAREVMEKKLFIENIILLREIEDRRDFMEEEIGVDMSIYEEKFLQVIENLFKIHFSKEQFALIQYYLYQVPTIVDWDGKIDLSDGKDMITVDFETPEQVWNVITSLKEVKK
Ga0315909_100338559F061656N/AMAKFCFYSKSNPTQEPVGVVDAISREEAIKFFSLTKMLPVNDFLTIFEVKSYTYGAQEGITESSKQLLKG
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