NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10028973

Scaffold Ga0315909_10028973


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10028973 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5403
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F083714Metagenome112Y
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100289732F086839AGGMSVKFAVNGLKETLDAFKEFQEQFGDKDAKSKVLIPAVREAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYVTPKDSVISLVSSRPIPKKVKQQFQAEYGNLKGKEYKKAKRKFYTEQGVMFDARAIANEFGTANMSAKPFMRISLESQAQAVATRLGLIIKQKMDSYKAKNLTT
Ga0315909_100289734F083714N/AMVFNGHTIQDIDALDEATMNEITVMYADGLIGNRSLLTMQGTLTSGVFNYLRASSSPPYTLKSVLGSAYDYIYGIEKTDPSDSLLTFMSQAPDFKMDRFKGK
Ga0315909_100289736F000934GAGMSLNTILQVSESIAINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSQNRNLLSSLRVADKATEQYLNFTNIGWLNYVAYQGDMTSGQIAACQWQTSSANKTLVLGSLPSISSTAYIVKKGDFCQVGRYAYIATADVQRGASSTVNIPVHRNLIDTLVSAVGAVIGQYGTTISLGGGTYTGATFPVILREYPTYTLVPMTNDSFISWNGPFVAIEDVL
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