NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10012830

Scaffold Ga0315909_10012830


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10012830 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8754
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008297Metagenome / Metatranscriptome335Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N
F052470Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100128301F008297N/AVQAGMQLERQYGPQRTLESLRRQYETSPQAYALNRGLGDQMTRQFERLYGTSPYASVEQNVAFNRQPGPFDFYGTIGTNIGNPELETKKV
Ga0315909_1001283010F052470AGGAGMALTISESQKMERKLPEAGATVGVLYSLVDLGHQKTNWDNQEKWTPKVRLTFELPDQTDEFEVEENGKRTTVQKPMVVSIEQTRSLGEKA
Ga0315909_100128303F025460AGGAGMAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMALKEQPDVDFTFEKGGLKVKGKLKDLPTLSQDPAFAPYLSGIGQTISNEQSLQNEDIETQRAELSDRLKDLQKKRVKQEIEMAKGDRRTFAMEAGLGLIGAKPRADVLKDIEAEAGVYRNKLAELGFNRQAGQMETNVPDYQSEAMPLQATPQAAPQVAPETPAQAQAQPEAPRNFKSLQEAKAAGVKPGQLIYINGKPGRLQARQ
Ga0315909_100128306F030376N/AMITLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDETFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND
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